Source code for blackjax.base

# Copyright 2020- The Blackjax Authors.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
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# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Callable, NamedTuple, Optional

from typing_extensions import Protocol

from .types import ArrayLikeTree, PRNGKey



Position = ArrayLikeTree



State = NamedTuple



Info = NamedTuple





class InitFn(Protocol):
    """A `Callable` used to initialize the kernel state.

    Sampling algorithms often need to carry over some informations between
    steps, often to avoid computing the same quantity twice. Therefore the
    kernels do not operate on the chain positions themselves, but on states that
    contain this position and other information.

    The `InitFn` returns the state corresponding to a chain position. This state
    can then be passed to the `update` function of the `SamplingAlgorithm`.

    """

    def __call__(self, position: Position, rng_key: Optional[PRNGKey]) -> State:
        """Initialize the algorithm's state.

        Parameters
        ----------
        position
           A chain position.

        Returns
        -------
        The kernel state that corresponds to the position.

        """





class UpdateFn(Protocol):
    """A transition kernel used as the `update` of a `SamplingAlgorithms`.

    Kernels are pure functions and are idempotent. They necessarily take a
    random state `rng_key` and the current kernel state (which contains the
    current position) as parameters, return a new state and some information
    about the transtion.

    Update functions is a simplified yet universal interface with every sampling
    algorithm. In essence, what all these algorithms do is take a rng state, a
    chain state (possibly a batch of data) and return a new state and some
    information about the transition.

    """

    def __call__(self, rng_key: PRNGKey, state: State) -> tuple[State, Info]:
        """Update the current state using the sampling algorithm.

        Parameters
        ----------
        rng_key:
            The random state used by JAX's random numbers generator.
        state:
            The current kernel state. The kernel state contains the current
            chain position as well as other information the kernel needs to
            carry over from the previous step.

        Returns
        -------
        A new state, as well as a NamedTuple that contains extra information
        about the transition that does not need to be carried over to the next
        step.

        """





class SamplingAlgorithm(NamedTuple):
    """A pair of functions that represents a MCMC sampling algorithm.

    Blackjax sampling algorithms are implemented as a pair of pure functions: a
    kernel, that takes a new samples starting from the current state, and an
    initialization function that creates a kernel state from a chain position.

    As they represent Markov kernels, the kernel functions are pure functions
    and do not have internal state. To save computation time they also operate
    on states which contain the chain state and additional information that
    needs to be carried over for the next step.

    init:
        A pure function which when called with the initial position and the
        target density probability function will return the kernel's initial
        state.

    step:
        A pure function that takes a rng key, a state and possibly some
        parameters and returns a new state and some information about the
        transition.

    """



    init: InitFn



    step: UpdateFn






class VIAlgorithm(NamedTuple):
    """A pair of functions that represents a Variational Inference algorithm.

    Blackjax variational inference algorithms are implemented as a pair of pure
    functions: an approximator, which takes a target probability density (and
    potentially a guide), and a sampling function that uses the approximation to
    draw samples.

    approximate
        A pure function, which when called with an initial position (and
        potentially a guide function) returns a state that allows to build
        an approximation to the target probability density function.
    sample
        A pure function which returns samples from the approximation computed
        by `approximate`.

    """



    init: Callable



    step: Callable



    sample: Callable






class RunFn(Protocol):
    """A `Callable` used to run the adaptation procedure."""

    def __call__(self, rng_key: PRNGKey, position: ArrayLikeTree):
        """Run the compiled algorithm."""





class AdaptationAlgorithm(NamedTuple):
    """A function that implements an adaptation algorithm."""



    run: RunFn